Welcome to OpenCAP’s documentation!

Contents:

• About
• CIViC introduction
  • What is CIViC?
  • What is an Assertion?
  • Getting Started
  • CIViC Resources
  • Contributing to CIViC
• OpenCAP introduction
• Build Custom Capture Panel
  • Identify variants for capture
  • Categorize variants based on variant length
  • Build custom capture panel
• Sequence Samples
  • Sample procurement
  • Sample storage
  • Nucleic acid generation
  • Library construction
  • Target enrichment strategies
  • High throughput sequencing
• Identify somatic variants
  • Outputs from Sequencing Pipeline
  • Alignment Strategies
  • Germline Variant Analysis
  • Somatic Variant Analysis
• Annotate variants
  • Build Binder Docker Image
  • Docker Image Set-up
  • Run OpenCAP in Binder
  • OpenCAP Output File

Indices and tables

• Index
• Module Index
• Search Page